Breakfast Egg Muffins Recipe (Egg Cups) (2024)

By Laura

Posted May 01, 2021, Updated Feb 29, 2024

5 from 16 votes

6 Comments

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This egg muffins recipe is a delicious, healthy, low-carb, make-ahead breakfast that’s freezer-friendly. Egg cups are easy to make with only 8 ingredients (including eggs, veggies, cheese, and spices) and are customizable!

Breakfast Egg Muffins Recipe (Egg Cups) (2)

These egg muffs are a delicious healthy breakfast recipe that’s perfect for meal prep (just like these breakfast egg sandwiches)! This simple, straightforward egg muffin recipe is made with with bacon, eggs, vegetables and cheese.

No extras (like milk, bread, potatoes, etc.). Just a bunch of protein and nutrients to start the day right!

Because eggs are so healthy and versatile they can be enjoyed for breakfast lunch and dinner! We often make egg muffins, egg casserole, this amazing omelette recipe, and this homemade frittata for healthy meals.

Breakfast Egg Muffins Recipe (Egg Cups) (3)

Egg Muffins: Ingredients & Substitutions

These egg muffins are highly customizable to your specific tastes! Here are some notes about the ingredients.

Breakfast Egg Muffins Recipe (Egg Cups) (4)
  • Bacon. Turkey bacon can be used in place of regular bacon. However, because of the lower fat content, you will need to add 1 Tablespoon olive oil to the fry pan when you add the veggies to cook them well. You can also use crumbled breakfast sausage in place of bacon with equally delicious results! If you wish to leave out the bacon and make this vegetarian, use 2 TBS olive oil to sauté the vegetables.
  • Minced Garlic.Garlic powder can be used in place of minced garlic, just add it with the rest of the spices.
  • Onion.I usually use a sweet, white onion. Any variety works well: red onion, yellow onion, green onions, etc.
  • Vegetables.Choose your favorite veggies! Bell peppers, broccoli, shredded zucchini, carrots, etc.
  • Dijon mustard.Any mustard variety works well in these egg muffins!
  • Eggs.there is no substituions for eggs in these breakfast egg cups.
  • Cheddar Cheese.I recommend an extra sharp cheddar cheese for the best flavor! Other cheeses that taste great in this egg muffin recipe are: Colby jack, Swiss cheese, pepper jack (for a spicy flavor) and mozzarella!
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How to Make Egg Muffins

This egg muffin recipe is really easy to make, as always we’ll walk through the process step by step, and don’t forget to watch the video!

Cook the bacon, onion and garlic

The first step in making these egg muffin cups is to sauté the bacon, onion and garlic over medium heat until the bacon just begins to brown. Be sure to stir every few minutes.

Note:For a vegetarian version (without bacon), simply add 2 TBS olive oil to the pan and sauté the onions and garlic together until the onions are soft, then add the rest of the veggies!

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Add veggies, cover and cook

Once the bacon just begins to brown, add vegetables, cover and cook for 5-10 minutes or until the veggies are soft and bacon is browned, stirring occasionally.

Note:If you use a variety of vegetables that cook at different speeds, make sure to handle that accordingly. For example, carrots cook faster than zucchini, so I would add the carrots and cook them until they become soft, then add zucchini.

Cool

Remove the pan from the heat and let the veggie/bacon mixture cool while you finish making the egg muffins recipe.

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Combine Eggs & Spices

While the bacon/veggie mixture is cooling, whisk the eggs. Then add mustard, salt, pepper and paprika to the beaten eggs and whisk to combine.

Next, add the cooled bacon/veggie mixture to the beaten eggs and stir until the mixture is uniform throughout. Then add the cheese!

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Bake

Fill each well of the prepared muffin tin ¾ full with egg mixture. Be careful not overfill the wells, because these egg muffins rise and will overflow if they are filled too much!

Bake in preheated oven for 25-30 minutes, or until tops are set and slightly browned and spring back when lightly pressed.

Cool

Let the egg cups cool for 5 minutes, then release them from the pan using a spoon or sharp knife, and serve warm.

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Serve

Serve these egg muffins with your favorite breakfast recipes, I especially love serving them with crispy potatoes and fruit salad. Or, if serving for dinner a nice side salad goes very well with egg muffins!

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Egg Cups Recipe FAQs

How do you store egg muffins?

Store these egg muffins in an airtight container in the refrigerator for up to 5 days,

How do you freeze egg muffins?

To freeze, simply place the egg muffins in a freezer-friendly, airtight container and freeze for up to 2 months. To thaw, transfer the egg muffins to the refrigerator and let thaw overnight. Or reheat in the microwave for 60 seconds per muffin.

How do you keep egg muffins from collapsing in the middle?

Follow this egg muffin recipe and you won’t have any sinking middles! Make sure you don’t over-whisk the ingredients, which creates air bubbles that could cause sinking.

Will egg muffins stick to paper liners?

In my experience, yes. That’s why I recommend greasing your muffin in well. They bake up nice and hearty so they are easy to remove if the pan is properly greased.

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Breakfast Egg Muffins Recipe (Egg Cups) (13)

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Breakfast Egg Muffins Recipe (Egg Cups)

Laura

This egg muffins recipe is a delicious, healthy, low-carb, make-ahead breakfast that's freezer-friendly. Egg cups are easy to make with only 8 ingredients (including eggs, veggies, cheese, and spices) and are customizable!

5 from 16 votes

Course Breakfast, brunch, lunch, Main Course

Cuisine American

Servings 14 Muffins

Calories 119

Prep Time15 minutes minutes

Cook Time30 minutes minutes

Total Time45 minutes minutes

Ingredients

Instructions

  • Preheat oven to 350 degrees F. Grease a standard 12-cup muffin tin, set aside.

  • In a large skillet, over medium heat, cook diced bacon until it just starts becomes soft.

  • Add minced garlic and onion and cook until bacon begins to brown.

  • Add vegetables, cover and cook for 5-10 minutes or until the veggies are soft and bacon is browned, stirring occasionally.

  • Remove from heat and let cool.

  • In a medium bowl, whisk together eggs.

  • Add mustard, sea salt, pepper and paprika and whisk to combine.

  • Add cooled bacon/veggie mixture to the beaten eggs and stir to combine.

  • Add cheese. Stir to combine.

  • Fill each well of the prepared muffin tin ¾ full with egg mixture. Do not overfill! These egg muffins rise and will overflow if the wells are filled too much!

  • Bake in preheated oven for 25-30 minutes, or until tops are set and slightly browned.

  • Cool for 5 minutes and serve warm.

Video

Notes

Ingredient Substitutions

  • Bacon. Turkey bacon can be used in place of regular bacon. However, because of the lower fat content, add 1 Tablespoon olive oil to the fry pan when you add the veggies to cook them well. You can also use crumbled breakfast sausage in place of bacon with equally delicious results! If you wish to leave out the bacon and make this vegetarian, use 2 Tablespoons olive oil to sauté the vegetables.
  • Minced Garlic.Garlic powder can be used in place of minced garlic, just add it with the rest of the spices.
  • Onion.I usually use a sweet, white onion. Any variety works well: red onion, yellow onion, green onions, etc.
  • Vegetables.Choose your favorite veggies! Bell peppers, broccoli, shredded zucchini, carrots, etc.
  • Dijon mustard.Any mustard variety works well in these egg muffins!
  • Eggs.there is no substituions for eggs in these breakfast egg cups.
  • Cheddar Cheese.I recommend an extra sharp cheddar cheese for the best flavor! Other cheeses that taste great in this egg muffin recipe are: Colby jack, Swiss cheese, pepper jack (for a spicy flavor) and mozzarella!

Store/Freeze

Store these egg muffins in an airtight container in the refrigerator for up to 5 days, or in the freezer for up to 2 months.

To freeze, simply place the egg muffins in a freezer-friendly, airtight container and freeze for up to 2 months. To thaw, transfer the egg muffins to the refrigerator and let thaw overnight. Or reheat in the microwave for 60 seconds per muffin.

Nutrition

Serving: 1muffin | Calories: 119kcal | Carbohydrates: 2g | Protein: 8g | Fat: 9g | Saturated Fat: 4g | Trans Fat: 1g | Cholesterol: 153mg | Sodium: 233mg | Potassium: 102mg | Fiber: 1g | Sugar: 1g | Vitamin A: 325IU | Vitamin C: 5mg | Calcium: 84mg | Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Did you enjoy this recipe? Have a question? Leave a comment below!

BReakfast Recipes

Egg Casserole (Egg Bake)

Frittata Recipe

Crispy Oven Roasted Potatoes

Breakfast Egg Sandwiches

Omelette Recipe

Best Quiche Recipe

Breakfast Egg Muffins Recipe (Egg Cups) (2024)

FAQs

How to get egg cups not to stick? ›

Alternatively, you can use paper liners or silicone liners to prevent sticking. You'll also need a rimmed baking sheet that the muffin pan fits into. (This is important! You'll be lifting this pan to place the egg muffins in the oven.)

How to keep egg cups from falling? ›

Egg muffins sometimes deflate because they were not beaten well enough or have cooled down and lost their structure. To keep your egg muffins from deflating, add a bit of flour and baking soda to your mixture.

Why are my egg muffins spongy? ›

The ideal whole-egg to egg-white ratio for a batch of egg muffins is 6 whole eggs plus 4 egg whites. This makes them higher in protein, but keeps them from being spongy. Watch the Water Content. If your egg muffins are soggy, you likely used a lot of veggies with high water content.

Why are my egg muffins watery? ›

Veggies should be sautéed so they don't release liquid as the egg cups bake–this is what makes egg muffins watery. Mix the base, making sure not to over-whisk, this can make your egg muffins spongy. Then mix in your meat (if using), cheese, and cooled veggies. Pour + bake.

Why are my egg cups rubbery? ›

If your egg muffins are rubbery they may be overcooked and left in the oven for too long. They don't need to be baked too long or else they will dry out and have a rubbery texture. Why did my egg cups deflate? This is normal to have the egg cups sink or deflate as they are cooling.

What is a good egg substitute for sticking? ›

16 egg substitutes
  • Mashed banana. Mashed banana can act as a binding agent when baking or making pancake batter. ...
  • Applesauce. Applesauce can also act as a binding agent. ...
  • Fruit puree. Fruit puree will help bind a recipe in a similar way to applesauce. ...
  • Avocado. ...
  • Gelatin. ...
  • Xanthan gum. ...
  • Vegetable oil and baking powder. ...
  • Margarine.
Mar 30, 2021

Why do my egg muffins fall? ›

All-purpose flour and baking powder – The secret ingredients! They help the egg muffins create a light and puffy–yet stable–structure as they bake. Without them, the egg muffins will collapse inside the muffin cups.

How to stop egg muffins from sinking? ›

Why do egg muffins deflate? You have beaten the eggs for too long. The eggs puff up in a hot oven, then deflate because there is not enough structure to hold the puffed-up eggs. Adding flour to the muffins prevents that.

What are the best liners for egg muffins? ›

Silicone muffin liners are best because they release the egg muffins easily, clean up quickly and you don't need to grease them. Avoid paper liners as they are difficult to remove from baked muffins. If silicone liners are not available, generously spray muffin tin with cooking spray.

What happens if you add too many eggs to muffins? ›

If there isn't enough egg, your batter or dough may not be able to hold its structure or could end up overly dry or dense. On the other hand, if there is too much egg, your baked goods could lose their shape due to excess liquid, or have a rubbery (or even overly cakey) texture depending on the recipe.

Why did my egg muffins sink in the middle? ›

Just like with the butter, over beating the batter once you add the eggs in will also cause the cupcakes to collapse in the middle, for the same reason: too much air being incorporated in the batter which will cause the cupcakes to rise rapidly and collapse.

How do you keep muffins moist and fluffy? ›

How to Make Homemade Muffins Moist: Our Top Tips
  1. Tips to Make Homemade Muffins Moist.
  2. Keep Wet and Dry Ingredients Separately.
  3. Add All Flavorings Last.
  4. Consider Paper Liners.
  5. Don't Overfill the Muffin Cups.
  6. Check the Temperature of Your Oven.
  7. Test if Muffins Are Fully Cooked.
  8. Top Your Muffins with Flavor.
Aug 9, 2021

Why are my muffins dense and not fluffy? ›

Too much liquid – If there is too much liquid in the batter, the muffins will be very dense. Make sure to measure liquid ingredients in the correct type of measuring cup. There's a big difference between measuring cups for dry ingredients and those for liquids.

How do you keep muffins from getting mushy? ›

Line an airtight container with paper towels and place the muffins on top in a single layer. And don't forget to add a few saltines to absorb moisture! Place paper towels above the muffins to soak up every bit of moisture. Seal with an airtight lid.

Should I add water or milk to muffin mix? ›

We don't recommend using milk instead of water because the milk can make holes in the paper liners or the sides of the muffins.

Why are my egg muffins sticking? ›

To prevent egg muffins from sticking to the tin, follow these steps: Properly Grease Your Muffin Tin:Use an olive oil spray to thoroughly grease each muffin cup, including the sides and bottom. Use Silicone Muffin Cups:Consider using silicone cups or liners, which are naturally nonstick.

How do you keep just egg from sticking? ›

I recommend using a non-stick pan or a well-seasoned cast iron pan to prevent sticking. It's best to use a thin, sturdy and wide silicone spatula to make flipping easy. If your pan gets too hot, just lower the heat or remove the pan from heat for 10-20 seconds to prevent burning.

How to make egg bites without sticking? ›

Egg-based recipes are notorious for sticking to metal muffin tins, even after giving them a thorough coating of cooking spray. Ask me how I know. That said, I HIGHLY recommend you use a silicone baking pan for this recipe.

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